Adding documentation to distribution.
13 lines of code changed in 2 files:
Adding 'util' to setup.
2 lines of code changed in 1 file:
Added spreg to setup. Rewrote autobuilder script using python.
30 lines of code changed in 2 files:
-update copyright
1 lines of code changed in 1 file:
adding more comments to Wsets doc strings.
33 lines of code changed in 1 file:
- unittests for weights complete
41 lines of code changed in 2 files:
- more unit tests for weights
70 lines of code changed in 1 file:
- weights unittests (in progress)
200 lines of code changed in 1 file:
fixing unittest for namespace
4 lines of code changed in 1 file:
- fixing unittests in mixture_smoothing
18 lines of code changed in 1 file:
making the doc test more general so that it passes on other computers
10 lines of code changed in 1 file:
adding verbose docs to ols.py; updating THANKS.txt for spreg
125 lines of code changed in 3 files:
adding unit tests for check contiguity
28 lines of code changed in 1 file:
adding unit tests for max-p; changed max-p lisa to use inheritance; more changes to max-p doc strings; can someone check the max-p doc tests and unit tests on a linux machine to see if they pass, thanks.
72 lines of code changed in 2 files:
cleaning up after test_build_lattice_shapefile. Removing created files.
2 lines of code changed in 1 file:
Adding missing value support to FileIO. warnings will be issued then missing values are found and the value will be set to pysal.MISSINGVALUE, currently None, but the user can change it as needed.
17 lines of code changed in 3 files:
Minor changes to instructions for building disk images.
15 lines of code changed in 2 files:
Deleting wiki page PageName.
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Adding imports for spatial diagnostics into doctests so it is replicable externally
2 lines of code changed in 1 file:
Adding verbose to doctests in the Spatial Diagnostics module (LM and Moran)
84 lines of code changed in 1 file:
date update
1 lines of code changed in 1 file:
mod
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updated release management instructions
34 lines of code changed in 1 file:
Created wiki page through web user interface.
11 lines of code changed in 1 file:
Edited wiki page PageName through web user interface.
5 lines of code changed in 1 file:
Created wiki page through web user interface.
10 lines of code changed in 1 file:
adding if __name__=='__main__' to tests missing it
4 lines of code changed in 2 files:
See issue #135, will mark any test as mising that does not contain an if __name__=="__main__"
This isn't failsafe, but it's better than what we have.
1 lines of code changed in 1 file:
issue #134, changing incomplete methods to rasie NotImplementedError.
35 lines of code changed in 1 file:
issue #124, documenting and testing lat2SW
49 lines of code changed in 2 files:
- fixing erroneous checkin
0 lines of code changed in 1 file:
-typo
28 lines of code changed in 2 files:
fixing warning in test_gwt
5 lines of code changed in 1 file:
merging serge's map classify tests with Pythoscope
222 lines of code changed in 1 file:
fixing Max-p doc string tests to match changes
4 lines of code changed in 1 file:
- more unit tests for mapclassify
84 lines of code changed in 2 files:
modifications to doc strings and adding unit tests
373 lines of code changed in 8 files:
Bug fix for gwt read method, expanded docstrings for wkt reader, and tests.
49 lines of code changed in 4 files:
- fixing logic bug in Box_Plot and more unit tests
58 lines of code changed in 2 files:
- partial unit tests for mapclassify
39 lines of code changed in 2 files:
Markov unit tests
102 lines of code changed in 2 files:
Modified datapath.
1 lines of code changed in 1 file:
Adding gwt file generated using juvenile dataset in opengeoda.
Removing sample.wkt in favor of previously existing stl_hom.wkt.
2803 lines of code changed in 2 files:
unit test and mods to gwt. close() test fails.
116 lines of code changed in 2 files:
Removing full2W from unit tests and __all__
1 lines of code changed in 2 files:
Removing method pysal.weights.util.full2W It is available in revission r757 http://code.google.com/p/pysal/source/browse/trunk/pysal/weights/util.py?spec=svn757&r=757
0 lines of code changed in 1 file:
Adding check to make sure the input array is squared (nxn) in full2W
2 lines of code changed in 1 file:
Unit test and bug fix for geoda_txt
9 lines of code changed in 2 files:
Renaming w_from_matrix to full2W to avoid confusion. Remains to be done sparse2W. Also updating doctests and unit tests
20 lines of code changed in 2 files:
Starting method w_from_matrix to convert full arrays as well as sparse matrices into W objects. Full array to W implemented, sparse to W remains to be done. Unit test also included
82 lines of code changed in 2 files:
Instructions for using pythoscope.
15 lines of code changed in 1 file:
Removed ergodic imports from "all".
1 lines of code changed in 1 file:
Charlie provides a method for working with numpy array value checks in unit
tests. Use np.testing.assert_almost_equal().
3 lines of code changed in 1 file:
Changed numpy call in theil.py.
2 of 3 tests currently fail. Passing it on.
52 lines of code changed in 2 files:
working with get_shared_segments
8 lines of code changed in 2 files:
Renamed some test classes to cut out inadvertent warnings.
Used pythoscope to generate test setup for markov. Previous file tested nothing.
46 lines of code changed in 3 files:
Fixing test, adding docstring example.
9 lines of code changed in 2 files:
adding GAL seek test and fixing small bug in gal reader.
cleaning up after files creating by test_shapefile
6 lines of code changed in 3 files:
tests for get_shared_segments
15 lines of code changed in 2 files:
new test_wkt.py for wkt reader module.
24 lines of code changed in 1 file:
Mods for unit tests. We moved test_wkt.py to util/tests last week.
14 lines of code changed in 4 files:
Renaming test classes to conform to our unit test standard. Added pythoscope
stub for gwt unit test.
53 lines of code changed in 5 files:
Modified doc strings for gal.py examples.
Added unit tests for gal.py. Error testing close method.
106 lines of code changed in 2 files:
found bug in get_segment_point_intersect, was not working if pt was colinear with segment.
Added a fix and unit tests.
Changed get_segments_intersect to work with overlapping segments.
63 lines of code changed in 3 files:
Ported spreg docs.
48 lines of code changed in 6 files:
porting doctests to unittests
adding many new unittests
fixed accuracy issue in is_collinear
identified bug with get_segments_intersect, fails when segments overlap
changed get_rectangle_rectangle_intersection to return Rectangle, Segment, Point or None to allow for overlap.
359 lines of code changed in 3 files:
Adding spreg modules, tests, example .gal file and mods to pysal init, and
pysal docstring test script to incorporate new package. Yeehaw!
2998 lines of code changed in 12 files:
Fixing bottle neck in gwt reader, adding support for GeoDa Style ID's and DBF id_order.
24 lines of code changed in 1 file:
Renamed 2 test classes. Seems pythoscope will ignore case when building
tests.
2 lines of code changed in 1 file:
Cleaning up names in smoothing module unit tests and adding missing ones. Completed
94 lines of code changed in 1 file:
Added an adjustable memory limit to distance_matrix, it will kick over to scipy's slower but more scalable algo when the required memory pased the threshold.
25 lines of code changed in 1 file:
Completed shapefile unit test.
11 lines of code changed in 1 file:
- now it really is complete
25 lines of code changed in 2 files:
removed unused scipy distance_matrix from common.py
moved our distance_matrix (and tests) from weights to cg.
updated callers
note: test_standalone contains many empty tests and will report failures.
176 lines of code changed in 6 files:
- test_user.py done
30 lines of code changed in 1 file:
docstring supplement
28 lines of code changed in 1 file:
docstring supplement
484 lines of code changed in 1 file:
Unit testing shapefiles. We introduce unit test failures intentionally.
220 lines of code changed in 2 files:
adding Unit tests for wkt. Fixing some namespace issues.
53 lines of code changed in 4 files:
Unit tests for weights.util finished (pending lat2SW)
77 lines of code changed in 1 file:
Adding lat2SW to __all__ so it shows up as pending test
1 lines of code changed in 1 file:
minor change to tests, use the same python to execute all tests
2 lines of code changed in 1 file:
adding testing stubs
0 lines of code changed in 2 files:
cleaning up namespace for core.util
759 lines of code changed in 6 files:
moving "converters" into core.util, this allows them to be used independently of FileIO.
632 lines of code changed in 5 files:
split old FileIO unit tests into seperate tests for each handler.
made a small change to in tests.py to prevent testing script from exiting when unittest.main is used.
220 lines of code changed in 6 files:
- unittests for weights user - not finished
97 lines of code changed in 1 file:
Adding unit tests for test_util. Not finished
61 lines of code changed in 1 file:
Added all to IOHandlers.
20 lines of code changed in 10 files:
- unit tests for spatial lag
39 lines of code changed in 1 file:
Adding work around for bug in scipy spatial, see pysal issue #126
10 lines of code changed in 1 file:
more namespace cleanup.
Identified cause of bug in issue #126, new unit test will fail until resolved.
16 lines of code changed in 6 files:
adding unit test for DistanceBand.
Double check on __all__ to make sure the entire list is on one line.
13 lines of code changed in 6 files:
fixing doc test.
1 lines of code changed in 1 file:
adding missing file
964 lines of code changed in 1 file:
Addressing issue #129, Moving W into weights.py and cleaning up imports.
67 lines of code changed in 5 files:
Moved cg/shapes tests to cg/tests dir. Modified tests.py to not call older
tests.
647 lines of code changed in 4 files:
Added from old tests.
23 lines of code changed in 1 file:
Removed redundant import from psyal init. Moved FileIO test module to
core/tests/ with data path modifications.
224 lines of code changed in 3 files:
more verbose doctests in interaction, according to issue 74
71 lines of code changed in 1 file:
Fixing import problem in r702
1 lines of code changed in 1 file:
- sphinx docs
3 lines of code changed in 3 files:
- adding interaction docs to api
8 lines of code changed in 1 file:
- fixed import induced error
2 lines of code changed in 1 file:
- addressing issue # 132
21 lines of code changed in 3 files:
adding unit tests.
25 lines of code changed in 3 files:
Edited wiki page DistributingPysal through web user interface.
6 lines of code changed in 1 file:
Edited wiki page DistributingPysal through web user interface.
2 lines of code changed in 1 file:
Added working unit tests for these modules, if bare.
20 lines of code changed in 2 files:
Added doctest to wkt.
53 lines of code changed in 1 file:
adding the unittest shell for markov, waiting on feedback from serge for the rest
38 lines of code changed in 1 file:
Created not_testing list for modules we do not want to test, such as the
inits, common.py and version.py. Tests also checks that test mods are not
empty. Output formatted mo betta.
19 lines of code changed in 1 file:
- more verbose comments in doc test example for rose
157 lines of code changed in 2 files:
moved content of load_directional to rose doctest, per recommendation of serge, removed load directional
77 lines of code changed in 3 files:
Returns module being tested.
1 lines of code changed in 1 file:
added unit test for spatial dynamics util
39 lines of code changed in 2 files:
added unittest for spatial_dynamic.rank
64 lines of code changed in 2 files:
added unittests for ergodic
50 lines of code changed in 2 files:
More cleaning up of report output.
17 lines of code changed in 1 file:
added unit test for spatial_dynamics/directional, had to change some of the code in directional to make it work in the unittest framework, no test for load_directional
47 lines of code changed in 2 files:
Fixed module parse error introduced in last commit.
5 lines of code changed in 1 file:
Cleaning up report message, file.
34 lines of code changed in 1 file:
Cleaned up Tables.py and added stubs for most of the undone unit test modules
so that their methods would appear in our unittest emails as untested
methods. Also added sample well-known text file.
114 lines of code changed in 21 files:
added full unit test for interaction and filenames for others in spatial_dynamics
51 lines of code changed in 6 files:
added to doctests in interaction
11 lines of code changed in 1 file:
Fixe straggler module with no _test() method.
4 lines of code changed in 1 file:
Adding unit tests for esda modules, expanded doctest for mixture_smoothing.
74 lines of code changed in 4 files:
Added verbose flag to doctest calls.
47 lines of code changed in 16 files:
Fixed moran_local unittest, modified doctest to call moran explicitly for user
benefit, and added verbose flag to doctests in two modules.
7 lines of code changed in 3 files:
Fixed unittest call, added Moran_Local test class.
12 lines of code changed in 1 file:
Docs. Another verbose log statement.
22 lines of code changed in 2 files:
Removing knnApproxW, no longer need we fixed a bug in knnW
1 lines of code changed in 1 file:
bug fix in tests
1 lines of code changed in 1 file:
Defines __all__, test mode is verbose, re-formatted author string.
* This module imports numpy in a non-standard way!!
* The docstrings numpy alias does not match the module alias !!
4 lines of code changed in 1 file:
added all to spatial dynamics util
5 lines of code changed in 1 file:
removed stand alone jacquez file
0 lines of code changed in 1 file:
Defined __all__ for esda modules.
26 lines of code changed in 4 files:
Defined __all__ for cg mods. Added verbose=True flag to doctest.testmod() in
shapes or standalone. We should check all doctest _test methods have
verbose=True.
7 lines of code changed in 2 files:
small changes to spatial_dynamics/utils
6 lines of code changed in 1 file:
made doctests more explicit and added __all__ to interaction
45 lines of code changed in 1 file:
recommitting myinteraction as interaction
367 lines of code changed in 1 file:
cleaning up and consolidating interaction files
0 lines of code changed in 2 files:
Fixing asymmetry doc test, try 3
5 lines of code changed in 1 file:
Adding __all__ ....
14 lines of code changed in 7 files:
Fixing asymmetry doc test, try 2
2 lines of code changed in 1 file:
Fixing asymmetry doc test
5 lines of code changed in 1 file:
Adding build_lattice_shapefile in weights.user:
build_lattice_shapefile Writes an ncol by nrow grid to a shapefile.
Adding bbcommon, get_rectangle_rectangle_intersection, point_touches_rectangle in cg.standalone:
bbcommon tests for touching rectangles
get_rectangle_rectangle_intersection returns the intersection of to rectangles
point_touches_rectangle returns True/Flase
Refactored get_shared_segments in cg.standalone:
Major speedup by using sets
Limiting search window to the intersection of the bounding boxes.
This adds a slight overhead, but should acctually speed things up for very detailed polygons.
179 lines of code changed in 2 files:
Added new test dirs to setup file.
19 lines of code changed in 1 file:
Edited wiki page DistributingPysal through web user interface.
6 lines of code changed in 5 files:
updates to myinteraction
24 lines of code changed in 2 files:
removed esda.util and moved some helper functions into spatial_dynamics.util
48 lines of code changed in 3 files:
changes to myinteraction and moved util from esda to spatial_dynamics
65 lines of code changed in 2 files:
Adding unittest for Wsets.
68 lines of code changed in 2 files:
- post namespace changes fixes
4 lines of code changed in 1 file:
add support for Minkowski p-norm distance metric parameter in full dist matrix calc.
16 lines of code changed in 1 file:
removing sprase distance calculation of full dist matrix, sparse overhead does not save us any time
0 lines of code changed in 1 file:
adding full distance matrix calculation using sparse matrices
65 lines of code changed in 1 file:
interaction updated with changes from 1/5 discussion
73 lines of code changed in 1 file:
- for optimization session
50 lines of code changed in 1 file:
removing old contiguity tests.
0 lines of code changed in 1 file:
Fixing doctest failure.
2 lines of code changed in 1 file:
Defined __all__. Made import explicit. Still needs test mod.
4 lines of code changed in 1 file:
Modified testing framework to build a list of expected unit tests by scanning the __all__ of each module. Missing tests are printed.
25 lines of code changed in 1 file:
- delete lambda magic
0 lines of code changed in 1 file:
Defined __all__ in Contiguity plus style changes and removed unused imports.
Added unit test for same module.
37 lines of code changed in 2 files:
fixed doctest in asymmetries
3 lines of code changed in 1 file:
Defined __all__ in spatial_lag. Style changes and removed unused imports in user.py.
9 lines of code changed in 2 files:
small change to the distance calculation class to make it work for vectors.
5 lines of code changed in 2 files:
defined __all__ in randomregion.
checking __all__ in all modules during tests.
removed from common import * from pysal.__init__
9 lines of code changed in 3 files:
Adding __all__ to user.py.
6 lines of code changed in 1 file:
fixed coincident point problem in knnW and made sure it returns k neighbors
7 lines of code changed in 1 file:
- stub for full distance matrices
57 lines of code changed in 1 file:
Moving space-time intercation to spatial_dynamics module.
364 lines of code changed in 3 files:
- docs
16 lines of code changed in 1 file:
permutation of rows/cols of a matrix
24 lines of code changed in 1 file:
old jacquez code using pysal knn, to be deleted after import into interaction
0 lines of code changed in 1 file:
moving/fixing weights unittests
216 lines of code changed in 3 files:
recreating sacramentot2.gal from OpenGeoDa "ROOK"
723 lines of code changed in 1 file:
Doc changes re building docs.
1 lines of code changed in 1 file:
- cleanup
0 lines of code changed in 1 file:
- approximate knn
73 lines of code changed in 1 file:
renaming sparse_lattice to lat2SW
5 lines of code changed in 1 file:
Adding sparse lattice to weights builder
41 lines of code changed in 1 file:
- fixing paths to examples in tests
21 lines of code changed in 4 files:
- update testing instructions for new integration testing
28 lines of code changed in 1 file:
- started unittests for esda in new integration testing framework
69 lines of code changed in 3 files:
See issue 121, close the file when the obj is deleted.
2 lines of code changed in 1 file:
- updated
0 lines of code changed in 1 file:
- old schemes
0 lines of code changed in 2 files:
- new integration testing
247 lines of code changed in 2 files:
- new 1.1 integration testing scheme.
42 lines of code changed in 1 file:
- testing
5 lines of code changed in 2 files:
- fixing doc test
3 lines of code changed in 1 file:
- missing gal files
1080 lines of code changed in 2 files:
Separating the doc testing from unit testing to allow for faster unit testing.
70 lines of code changed in 2 files: